Thanks for the reply. I doubled check swatches and these are the ones generated by Map Generator 2. I have those programs you mentioned and can fix this manually, but if I can somehow get these transitions to flow automatically it would save me roughly 50 hours of work or so. I'm still fumbling with it.
edit: I think I am using an older build of MG2, will see if this is the problem..
edit edit: It's not
